STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimJRibosomal-protein-alanine acetyltransferase RimJ. (194 aa)    
Predicted Functional Partners:
AII87473.1
Hypothetical protein, SURF1.
 
     0.852
ymxG
Putative zinc protease YmxG.
  
    0.834
thrC
Threonine synthase ThrC.
       0.829
ctaE
Cytochrome c oxidase subunit 3.
       0.736
ctaG
Cytochrome c oxidase assembly protein CtaG.
       0.716
AII85881.1
Hypothetical protein.
  
     0.606
ctaB
Protoheme IX farnesyltransferase CtaB.
       0.590
AII86820.1
Putative acetyltransferase.
  
   
 0.525
ctaC
Cytochrome c oxidase subunit 2 precursor.
       0.505
AII88526.1
Hypothetical protein, metal-dependent phosphohydrolase.
 
     0.478
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.