Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
ymxGPutative zinc protease YmxG. (420 aa)    
Predicted Functional Partners:
nuoEF
NADH-quinone oxidoreductase subunits E/F (fused).
   
 0.983
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit PetA.
 
 
 0.965
AII88374.1
Putative zinc protease y4wB.
  
0.962
AII87473.1
Hypothetical protein, SURF1.
  
 
 0.912
petC
Cytochrome c1.
   
 0.889
ctaE
Cytochrome c oxidase subunit 3.
   
 
 0.861
rimJ
Ribosomal-protein-alanine acetyltransferase RimJ.
  
    0.823
thrC
Threonine synthase ThrC.
       0.818
atpA
ATP synthase alpha subunit AtpA.
   
 0.809
nuoG
NADH-quinone oxidoreductase subunit G.
   
 0.796
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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