STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctaBProtoheme IX farnesyltransferase CtaB. (311 aa)    
Predicted Functional Partners:
ctaD
Cytochrome c oxidase subunit 1.
 0.999
ctaE
Cytochrome c oxidase subunit 3.
 
 
 0.999
ctaC
Cytochrome c oxidase subunit 2 precursor.
 
 0.999
ctaG
Cytochrome c oxidase assembly protein CtaG.
 
 0.997
ctaA
Heme A synthase CtaA.
 
 0.991
hemH
Ferrochelatase HemH.
     
 0.927
AII87473.1
Hypothetical protein, SURF1.
 
 
 0.900
AII87760.1
SCO-like protein.
  
 0.659
polA
DNA polymerase I.
  
  
 0.626
tldD
Protein TldD.
       0.600
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.