STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AII87479.1SMF family protein. (383 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase TopA.
   
 0.958
AII87028.1
Hypothetical protein competence protein E.
 
  
 0.811
AII88578.1
Hypothetical protein, ComF/GntX family.
 
 
 0.809
AII87049.1
Single-stranded DNA-binding protein.
 
  
 0.696
pyrB
Aspartate carbamoyltransferase PyrB.
      0.675
recA
Protein RecA.
  
 
 0.636
tldD
Protein TldD.
       0.617
recG
ATP-dependent DNA helicase RecG.
  
     0.611
fliP
Flagellar biosynthetic protein FliP.
  
    0.592
ydaM
Putative glycosyltransferase YdaM.
  
    0.584
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.