Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
fbaFructose-bisphosphate aldolase Fba. (279 aa)    
Predicted Functional Partners:
tpiA
Triosephosphate isomerase TpiA.
  
 0.985
eno
Enolase Eno.
  
 0.979
iolC
5-dehydro-2-deoxygluconokinase IolC.
 
 
 0.978
gap1
Glyceraldehyde-3-phosphate dehydrogenase Gap.
  
 0.972
gap2
Glyceraldehyde-3-phosphate dehydrogenase Gap.
  
 0.972
gap3
Glyceraldehyde-3-phosphate dehydrogenase Gap.
  
 0.972
pgi
Glucose-6-phosphate isomerase Pgi.
  
 0.968
AII86471.1
Transaldolase.
  
 0.966
AII85832.1
cbbT/tktB: transketolase.
  
 0.956
tktA
Transketolase TktA.
  
 0.956
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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