STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxA4Sarcosine oxidase alpha subunit SoxA. (984 aa)    
Predicted Functional Partners:
soxD4
Sarcosine oxidase subunit SoxD.
 
 
 0.989
soxB4
Sarcosine oxidase beta subunit SoxB.
 
 
 0.971
soxG4
Sarcosine oxidase subunit SoxG.
 
 
 0.971
soxD1
Sarcosine oxidase delta subunit SoxD.
 
 
 0.955
soxD3
Sarcosine oxidase subunit SoxD.
 
 
 0.953
gcvP
Glycine dehydrogenase GcvP.
  
 
 0.941
soxD5
Sarcosine oxidase subunit SoxD.
 
 
 0.931
soxB1
Sarcosine oxidase beta subunit SoxB.
 
 
 0.895
soxB5
Sarcosine oxidase beta subunit SoxB.
 
 
 0.895
soxB3
Sarcosine oxidase beta subunit SoxB.
 
 
 0.893
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.