STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ftsHCell division protease FtsH. (639 aa)    
Predicted Functional Partners:
hflK
Protein HflK.
 
 0.948
hpt
Hypoxanthine phosphoribosyltransferase Hpt.
  
  
 0.889
rpoC
DNA-directed RNA polymerase beta subunit RpoC.
 
 
 0.886
AII88268.1
Putative protein hflC.
  
 0.879
atpA
ATP synthase alpha subunit AtpA.
   
 0.861
rrmJ
Ribosomal RNA large subunit methyltransferase J.
 
  
 0.856
clpX
ATP-dependent Clp protease ATP-binding subunit ClpX.
  
  
 0.847
rpsJ
30S ribosomal protein S10.
  
 
 0.844
rpsA
30S ribosomal protein S1.
  
   0.827
rpsK
30S ribosomal protein S11.
   
 
 0.822
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.