STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87516.1Putative ribosomal protein L11 methyltransferase. (290 aa)    
Predicted Functional Partners:
rplK
50S ribosomal protein L11.
    
 
 0.792
AII86117.1
RNA methyltransferase.
  
  
 0.780
AII86575.1
Putative DNA helicase II.
 
    0.729
AII86610.1
Hypothetical protein, DnaJ.
 
  
 0.727
AII88369.1
Putative ribosomal RNA small subunit methyltransferase B.
 
  
 0.715
rlmH
Ribosomal RNA large subunit methyltransferase H.
 
   
 0.685
dnaJ
Chaperone protein DnaJ.
  
  
 0.679
AII86179.1
Hypothetical protein DUF1013.
 
      0.644
msrA
Peptide methionine sulfoxide reductase MsrA.
       0.610
AII87518.1
Hypothetical protein, major facilitator superfamily transporter.
       0.595
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.