STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ihfBIntegration host factor beta subunit IhfB. (93 aa)    
Predicted Functional Partners:
ihfA
Integration host factor alpha subunit IhfA.
 
0.982
hup
DNA-binding protein HU.
 
 0.891
trpF
N-(5'-phosphoribosyl)anthranilate isomerase TrpF.
     
 0.815
rpsA
30S ribosomal protein S1.
 
  
 0.811
AII87528.1
Hypothetical protein.
       0.800
trpB
Tryptophan synthase beta chain TrpB.
   
 
 0.712
rpsO
30S ribosomal protein S15.
  
  
 0.601
rpsT
30S ribosomal protein S20.
  
  
 0.530
AII88369.1
Putative ribosomal RNA small subunit methyltransferase B.
 
  
 0.529
nusA
Transcription elongation protein NusA.
 
 
   0.524
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.