STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87553.1NAD/mycothiol-dependent formaldehyde dehydrogenase. (379 aa)    
Predicted Functional Partners:
yeiG
S-formylglutathione hydrolase YeiG.
 
 0.971
AII87552.1
Putative tetracycline resistance protein, class C.
       0.735
dgoD
D-galactonate dehydratase DgoD.
 
     0.709
catD
3-oxoadipate enol-lactonase CatD; Beta-ketoadipate enol-lactone hydrolase II.
  
 
 0.701
AII88074.1
Iron-containing alcohol dehydrogenase.
  
 
 0.693
sRY
Threo-3-hydroxyaspartate ammonia-lyase SRY.
  
  
 0.501
AII87550.1
2-haloalkanoic acid dehalogenase.
  
    0.498
AII87456.1
Putative deaminase.
  
    0.467
pdhB
Pyruvate dehydrogenase E1 component beta subunit PdhB.
  
  
 0.440
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.