STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87558.1Putative aminotransferase. (456 aa)    
Predicted Functional Partners:
speB2
Agmatinase SpeB.
  
 
  0.915
AII88230.1
Arginase family protein.
   
 
  0.902
AII88048.1
Aldehyde dehydrogenase.
   
 0.901
AII88394.1
Aldehyde dehydrogenase.
   
 0.901
AII85698.1
Aldehyde dehydrogenase.
    
 0.900
aldA
Aldehyde dehydrogenase AldA.
   
 0.900
AII87557.1
Hypothetical protein.
  
  
 0.682
puuB2
Gamma-glutamylputrescine oxidoreductase PuuB.
 
    0.577
puuB1
Gamma-glutamylputrescine oxidoreductase PuuB.
 
    0.497
gcvT2
Aminomethyltransferase; Similar to mitochondrial aminomethyltransferase.
     
 0.491
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.