STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcvHGlycine cleavage system protein GcvH. (121 aa)    
Predicted Functional Partners:
gcvT2
Aminomethyltransferase; Similar to mitochondrial aminomethyltransferase.
 0.999
gcvP
Glycine dehydrogenase GcvP.
 
 0.999
dmdA2
Putative dimethyl sulfoniopropionate demethylase DmdA.
 
 0.990
glyA
Serine hydroxymethyltransferase GlyA.
  
 
 0.973
lpd1
Dihydrolipoyl dehydrogenase Lpd.
 
  
 0.967
lpd2
Dihydrolipoyl dehydrogenase Lpd.
 
  
 0.965
sgaA1
Serine--glyoxylate aminotransferase SgaA.
  
 
 0.909
sgaA2
Serine--glyoxylate aminotransferase SgaA.
  
 
 0.909
putA
Bifunctional protein PutA; Including proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase.
    
 0.889
dmdA1
Putative dimethyl sulfoniopropionate demethylase DmdA.
 
 0.888
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.