STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proCPyrroline-5-carboxylate reductase ProC. (271 aa)    
Predicted Functional Partners:
putA
Bifunctional protein PutA; Including proline dehydrogenase and delta-1-pyrroline-5-carboxylate dehydrogenase.
   
 0.977
proB
Glutamate 5-kinase ProB.
 
 0.954
arcB
Ornithine cyclodeaminase ArcB.
   
 
 0.914
pip
Proline iminopeptidase Pip.
    
  0.901
proA
Gamma-glutamyl phosphate reductase ProA.
 
 
 0.889
csaA
Protein CsaA.
       0.829
AII87590.1
Hypothetical protein DUF1790.
       0.769
AII88425.1
Hypothetical protein, alanine racemase-like protein.
  
 0.769
rplF
50S ribosomal protein L6.
    
  0.651
AII87587.1
Hypothetical protein, acetyltransferase-like protein.
     
 0.646
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.