STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87637.1Cold-shock DEAD box protein A. (655 aa)    
Predicted Functional Partners:
recQ
ATP-dependent DNA helicase RecQ.
 
 0.958
pnp
Polyribonucleotide nucleotidyltransferase Pnp.
  
 0.838
fusA
Elongation factor FusA.
   
 0.829
rplD
50S ribosomal protein L4.
   
 0.824
rrmJ
Ribosomal RNA large subunit methyltransferase J.
  
 0.808
rpsD
30S ribosomal protein S4.
  
 0.805
rplJ
50S ribosomal protein L10.
   
 0.803
rplC
50S ribosomal protein L3.
   
 0.776
hrpB
ATP-dependent RNA helicase HrpB.
 
 0.755
rpsC
30S ribosomal protein S3.
   
 0.718
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.