STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87654.1Dimethylglycine dehydrogenase. (832 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase GcvP.
  
 0.964
soxD3
Sarcosine oxidase subunit SoxD.
 
 0.928
soxA3
Sarcosine oxidase alpha subunit SoxA.
 
0.918
AII87968.1
Creatinase.
  
 0.916
soxA5
Sarcosine oxidase alpha subunit SoxA.
 
0.913
soxD5
Sarcosine oxidase subunit SoxD.
  
 0.898
soxG3
Sarcosine oxidase subunit SoxG.
  
 0.867
soxG4
Sarcosine oxidase subunit SoxG.
  
 0.867
soxG5
Sarcosine oxidase subunit SoxG.
  
 0.867
gcvH
Glycine cleavage system protein GcvH.
  
 0.776
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.