STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpStryptophanyl-tRNA synthase TrpS. (338 aa)    
Predicted Functional Partners:
AII85763.1
Hypothetical protein, alpha/beta hydrolase-like protein.
      0.898
serS
seryl-tRNA synthase SerS.
  
 
 0.851
ileS
isoleucyl-tRNA synthase IleS.
  
 
 0.778
pheT
phenylalanyl-tRNA synthase beta chain PheT.
  
  
 0.753
AII87219.1
arginyl-tRNA synthase.
  
  
 0.725
hisS
histidyl-tRNA synthase HisS.
  
 
 0.725
AII87675.1
Hypothetical protein, rhomboid protease.
  
    0.711
metG
methionyl-tRNA synthase MetG.
  
 
 0.703
valS
valyl-tRNA synthase ValS.
  
  
 0.657
guaB
Inosine-5'-monophosphate dehydrogenase GuaB.
  
  
 0.646
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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