STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87678.1Hypothetical protein. (396 aa)    
Predicted Functional Partners:
mviN
Virulence factor MviN homolg.
       0.829
glnD
Uridylyltransferase GlnD.
       0.829
AII87680.1
Hypothetical protein UPF0102.
 
     0.758
AII87679.1
Putative tetrapyrrole methylase.
  
   0.744
AII88421.1
Hypothetical protein.
 
     0.683
AII85617.1
Hypothetical protein DUF721.
  
     0.657
gshB
Glutathione synthase GshB.
       0.589
AII86114.1
Hypothetical protein.
  
     0.556
AII87149.1
Putative branched-chain amino acid transport system permease protein.
 
 
 0.555
AII88449.1
Hypothetical protein, HemY.
  
     0.548
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.