STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87712.1Putative single-stranded-DNA-specific exonuclease. (578 aa)    
Predicted Functional Partners:
recQ
ATP-dependent DNA helicase RecQ.
    
 0.928
glpX
Fructose-1,6-bisphosphatase class II.
       0.829
priA
Primosomal protein N'.
 
     0.690
hom
Homoserine dehydrogenase Hom.
       0.667
recG
ATP-dependent DNA helicase RecG.
 
   
 0.635
mutL
DNA mismatch repair protein MutL.
 
   
 0.620
AII88086.1
Putative DNA repair protein RecO.
 
   
 0.609
polA
DNA polymerase I.
  
   
 0.598
mutS
DNA mismatch repair protein MutS.
 
  
 0.597
dnaB
Replicative DNA helicase DnaB.
 
  
 0.595
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.