STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
comDSulfopyruvate decarboxylase alpha subunit ComD. (158 aa)    
Predicted Functional Partners:
comE
Sulfopyruvate decarboxylase beta subunit ComE.
  
  0.999
AII87715.1
Zinc-type alcohol dehydrogenase.
 
     0.717
gno2
Gluconate 5-dehydrogenase Gno.
 
     0.713
hisD2
Histidinol dehydrogenase HisD.
       0.677
maeB
NADP-dependent malic enzyme MaeB.
   
    0.600
AII87718.1
HTH-type transcriptional regulator, LacI family.
       0.494
dmsB
DMSO reductase chain B.
   
    0.435
fdhB
Formate dehydrogenase, iron-sulfur subunit FdhB.
   
    0.435
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.