STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadACadmium-transporting ATPase CadA. (781 aa)    
Predicted Functional Partners:
AII87761.1
Putative HTH-type transcriptional regulator.
 
  
 0.741
AII87763.1
Hypothetical protein.
 
   
 0.732
AII87759.1
Hypothetical protein, disulfide bond formation protein.
 
   
 0.689
AII87758.1
Hypothetical protein.
 
 
 
 0.688
AII87756.1
SCO-like protein.
 
   
 0.654
AII87757.1
Hypothetical protein.
 
   
 0.618
AII87750.1
ParB-like nuclease.
       0.533
AII87760.1
SCO-like protein.
 
   
 0.497
AII87752.1
Hypothetical protein.
       0.464
AII86343.1
Cl- channel, voltage-gated family protein.
  
  
 0.460
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.