STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ugpCSn-glycerol-3-phosphate import ATP-bindingprotein UgpC. (348 aa)    
Predicted Functional Partners:
ugpE
Sn-glycerol-3-phosphate transport system permease protein UgpE.
 0.996
ugpA
Sn-glycerol-3-phosphate transport system permease protein UgpA.
 
 0.987
ugpB
Sn-glycerol-3-phosphate-binding periplasmic protein UgpB.
 
 0.971
AII87792.1
ABC transporter permease protein.
 0.969
AII87793.1
ABC transporter permease protein.
 0.960
AII87795.1
ABC transporter ATP-binding protein.
  
  
 
0.908
AII87794.1
ABC transporter extracellular solute-binding protein.
 
 0.897
aglG
Alpha-glucoside transport system permease protein AglG.
 
 0.885
AII87990.1
Putative ribose ABC transporter, permease protein RbsC.
 
 0.882
AII87991.1
Putative ribose ABC transporter, permease protein RbsC.
 
 0.864
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.