STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87834.1Hypothetical protein, 4Fe-4S ferredoxin-like protein. (663 aa)    
Predicted Functional Partners:
AII87831.1
Hypothetical protein, cytoplasmic chaperon TorD.
 
  
 0.943
AII87833.1
Putative molybdopterin-guanine dinucleotide biosynthesis protein A.
 
    0.918
AII87832.1
Hypothetical protein.
 
     0.916
fdhB
Formate dehydrogenase, iron-sulfur subunit FdhB.
 
   
 0.907
fdhA
Formate dehydrogenase alpha subunit FdhA.
 
   
 0.900
AII87018.1
Hypothetical protein, pyruvate ferredoxin/flavodoxin oxidoreductase.
  
  
 0.875
AII87830.1
Putative twin-arginine translocation pathway signal sequence domain protein.
 
     0.873
fdhI
Formate dehydrogenase, gamma subunit FdhI.
 
   
 0.871
AII87839.1
Hypothetical protein.
 
     0.862
AII87838.1
Hypothetical protein.
 
   
 0.836
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.