STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87858.1Galactonate dehydratase. (378 aa)    
Predicted Functional Partners:
AII87846.1
Putative L-rhamnonate dehydratase rhamD.
 
  
 
0.943
AII87859.1
Xylose isomerase-like protein.
 
     0.783
AII87857.1
Putative rhamnose ABC transport system, substrate-binding protein RhaS.
       0.482
AII87860.1
Putative aldo/keto reductase.
  
    0.473
dgoA
2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA.
   
 0.448
ycjG
L-Ala-D/L-Glu epimerase YcjG.
  
     0.404
AII87850.1
Putative rhamnose mutarotase RhaM.
     
 0.400
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.