STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87859.1Xylose isomerase-like protein. (271 aa)    
Predicted Functional Partners:
AII87851.1
Putative acetoacetate decarboxylase Adc.
 
    0.866
AII87852.1
Putative oxidoreductase.
 
  
 0.851
AII87858.1
Galactonate dehydratase.
 
     0.783
AII87850.1
Putative rhamnose mutarotase RhaM.
 
    0.728
AII87846.1
Putative L-rhamnonate dehydratase rhamD.
 
     0.720
rbsC2
Ribose import ABC transporter, substrate binding protein RbsC.
 
    0.626
AII87857.1
Putative rhamnose ABC transport system, substrate-binding protein RhaS.
 
    0.605
rhaM
L-rhamnose mutarotase RhaM.
 
    0.582
AII87989.1
Putative ribose ABC transporter, substrate binding protein RbsB.
 
    0.569
iolD
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD.
  
  
 0.560
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.