STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87894.1Signal transduction histidine kinase. (458 aa)    
Predicted Functional Partners:
pdhB
Pyruvate dehydrogenase E1 component beta subunit PdhB.
   
 0.931
cheY
Response regulator CheY.
 
 
 0.897
AII88428.1
Response regulator receiver protein.
 
 
 0.856
merA
Mercuric reductase MerA.
   
 0.819
AII87896.1
SNARE associated golgi protein.
    
  0.818
phoB
Phosphate regulon transl protein PhoB.
 
 
 0.772
AII85959.1
Putative response regulator receiver protein, CheY like protein.
 
 
 0.751
AII85881.1
Hypothetical protein.
  
     0.708
regB
Sensor histidine kinase RegB.
 
 
 0.707
ctrA
Cell cycle transcriptional regulator.
 
 
 0.699
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.