STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87907.1Hypothetical protein. (206 aa)    
Predicted Functional Partners:
AII87906.1
Putative fatty acid hydroxylase.
       0.817
AII87908.1
Hypothetical protein, phosphogylcerate mutase.
       0.817
argB
Acetylglutamate kinase ArgB.
       0.808
fdhA
Formate dehydrogenase alpha subunit FdhA.
  
 0.767
fdh
Formate dehydrogenase Fdh.
  
 0.767
AII86420.1
Hypothetical protein, dihydrooronate dehydrogenase.
   
 
 0.672
gltB
Glutamate synthase [NADPH] large chain GltB.
  
  
 0.636
oxaA
Inner membrane protein OxaA.
       0.621
AII87904.1
Putative GTP-binding protein EngB.
       0.620
AII87903.1
Hypothetical protein, molybdenum cofactor sulfurase.
       0.605
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.