STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rplC50S ribosomal protein L3. (243 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6.
 0.999
rplW
50S ribosomal protein L23.
 
 0.999
rplD
50S ribosomal protein L4.
 0.999
rpsJ
30S ribosomal protein S10.
 0.999
rplB
50S ribosomal protein L2.
 0.999
rplV
50S ribosomal protein L22.
 
 0.998
rplP
50S ribosomal protein L16.
 0.998
rplO
50S ribosomal protein L15.
 
 0.997
rplM
50S ribosomal protein L13.
 
 0.996
rplR
50S ribosomal protein L18.
 
 0.995
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.