STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII87947.1ABC transporter ATP-binding protein. (246 aa)    
Predicted Functional Partners:
AII87949.1
Putative ABC transporter periplasmic binding protein.
 
 0.993
AII87948.1
ABC tansporter permease protein.
 0.992
AII87174.1
Sugar (ribose) ABC-transport system ATP binding protein.
  
  
 
0.906
AII87946.1
Hypothetical protein.
 
     0.873
rbsC1
Ribose ABC transport system, permease protein RbsC.
 0.855
AII87950.1
Putative transcriptional repressor.
 
   
 0.841
AII87855.1
Putative ribose ABC transport system, permease protein RbsC.
 0.779
AII86763.1
Sugar ABC transporter, permease protein.
 0.717
AII87175.1
Sugar (ribose) ABC transporter permease protein.
 0.681
AII87854.1
Putative ribose ABC transport system, permease protein RbsC.
 0.680
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.