STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proXGlycine betaine-binding periplasmic protein ProX. (321 aa)    
Predicted Functional Partners:
proV
Glycine betaine/L-proline transport ATP-binding protein ProV.
 
 0.999
opuAA
Glycine betaine transport ATP-binding protein OpuAA.
 
 0.997
proW
Glycine betaine/L-proline transport system permease protein ProW.
 
 
 0.997
opuAC
Glycine betaine transporter substrate-binding protein OpuAC.
  
  
 0.991
opuAB
Glycine betaine transport system permease protein OpuAB.
 
 
 0.986
bztC
Glutamate/glutamine/aspartate/asparagine transport system permease protein BztC.
  
  
 0.900
AII86936.1
Hypothetical protein DUF140.
     
 0.893
AII87969.1
Putative hydrolase.
 
     0.885
AII86675.1
Putative inner membrane amino-acid ABC transporter permease protein.
     
 0.883
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
    
  0.880
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.