STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmkThymidylate kinase Tmk. (204 aa)    
Predicted Functional Partners:
AII88015.1
Hypothetical protein, DNA polymerase III delta subunit.
 
 
 0.966
dut
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut.
  
 
 0.928
tdk
Thymidine kinase Tdk.
  
 
 0.925
nrdJ
Vitamin B12-dependent ribonucleotide reductase NrdJ.
  
 
 0.923
AII87639.1
Vitamin B12-dependent ribonucleoside-diphosphate reductase.
  
 
 0.923
surE1
5'-nucleotidase SurE.
 
 
  0.919
AII88304.1
Thymidylate synthase.
    
 0.918
surE2
5'-nucleotidase SurE.
    
  0.917
ndk
Nucleoside diphosphate kinase Ndk.
    
 0.916
AII88016.1
TatD family deoxyribonuclease.
    
 0.905
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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