STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88016.1TatD family deoxyribonuclease. (262 aa)    
Predicted Functional Partners:
tmk
Thymidylate kinase Tmk.
    
 0.905
AII88015.1
Hypothetical protein, DNA polymerase III delta subunit.
 
  
 0.871
rppH
RNA pyrophosphohydrolase RppH.
 
    0.860
dacC
D-alanyl-D-alanine carboxypeptidase DacC.
  
    0.835
AII88017.1
Hypothetical protein, metallo-beta-lactamase.
     
 0.833
AII88018.1
Membrane transport protein.
       0.829
ksgA
Dimethyladenosine transferase KsgA.
 
  
 0.799
AII87342.1
Malonyl CoA-acyl carrier protein transacylase.
     0.691
AII87338.1
Aminodeoxychorismate lyase.
    
 0.664
dnaX
DNA polymerase III subunit tau.
 
   
 0.571
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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