STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ghrAGlyoxylate/hydroxypyruvate reductase GhrA. (309 aa)    
Predicted Functional Partners:
gyaR2
Glyoxylate reductase GyaR.
 
  
0.930
sgaA1
Serine--glyoxylate aminotransferase SgaA.
  
 
 0.915
sgaA2
Serine--glyoxylate aminotransferase SgaA.
  
 
 0.915
glcB
Malate synthase GlcB.
     
 0.908
AII87398.1
Glycerate kinase.
    
 0.907
glcD
Glycolate oxidase subunit GlcD.
  
 
 0.906
glcE
Glycolate oxidase subunit GlcE.
  
 
 0.906
AII86885.1
Putative HAD-superfamily hydrolase.
    
 0.905
AII87725.1
Putative HAD-family hydrolase.
    
 0.905
AII87914.1
Putative phosphoglycerate phosphatase.
    
 0.905
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.