STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdxJPyridoxine 5'-phosphate synthase PdxJ. (247 aa)    
Predicted Functional Partners:
pdxH
Pyridoxine/pyridoxamine 5'-phosphate oxidase PdxH.
  
  
 0.942
era
GTP-binding protein Era.
    
 0.935
acpS
Holo-[acyl-carrier-protein] synthase AcpS.
 
  
 0.902
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase PdxA.
 
  
 0.875
rpoZ
DNA-directed RNA polymerase subunit omega.
 
     0.817
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT.
  
    0.793
lepB
Signal peptidase I.
 
   
 0.792
AII88093.1
Hypothetical protein DUF2062.
       0.790
AII88086.1
Putative DNA repair protein RecO.
     
 0.788
rnc
Ribonuclease 3.
     
 0.748
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.