STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88096.1Putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase. (194 aa)    
Predicted Functional Partners:
folP
Dihydropteroate synthase FolP.
 
 
 0.998
AII85805.1
Hypothetical protein, dihydroneopterin aldolase.
 
 
 0.994
AII88569.1
Hypothetical protein, poly A polymerase.
  
  
 0.768
ribD
Riboflavin biosynthesis protein RibD.
 
  
 0.767
AII88093.1
Hypothetical protein DUF2062.
 
     0.730
rpoZ
DNA-directed RNA polymerase subunit omega.
 
     0.728
AII88097.1
Hypothetical protein DUF88.
       0.698
spoT
Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase SpoT.
       0.686
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF.
  
  
 0.674
folC
Bifunctional protein FolC.
  
  
 0.668
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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