STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88151.1Hypothetical protein, transmembrane. (244 aa)    
Predicted Functional Partners:
tctC1
Tripartite tricarboxylate transporter (TTT) protein TctC.
 
     0.945
tctA1
Tripartite tricarboxylate transporter (TTT) protein TctA.
 
     0.889
AII88145.1
Hypothetical protein, UPF0261.
 
     0.881
AII88147.1
Cytochrome P450.
 
     0.846
puuC
Gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC.
 
     0.832
puuA1
Gamma-glutamylputrescine synthase PuuA.
 
     0.820
AII88148.1
Glutamine amidotransferase class-I.
 
     0.703
hpaD
3,4-dihydroxyphenylacetate 2,3-dioxygenase HpaD.
 
     0.663
hpaF
5-carboxymethyl-2-hydroxymuconate isomerase.
 
     0.661
hpaR
Homoprotocatechuate degradative operon repressor.
  
     0.580
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.