STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phrB2Deoxyribodipyrimidine photo-lyase PhrB. (537 aa)    
Predicted Functional Partners:
AII86498.1
DNA photolyase, FAD-binding/cryptochrome.
  
     0.754
AII86497.1
Hypothetical protein, photolyase.
 
   
 0.699
AII88183.1
Hypothetical protein.
 
     0.587
AII87638.1
Hypothetical protein DUF393.
 
     0.505
cfa
Cyclopropane-fatty-acyl-phospholipid synthase Cfa.
 
   
 0.481
AII88181.1
Cystathionine beta-lyase.
       0.408
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.