STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdaBL-serine dehydratase SdaB. (457 aa)    
Predicted Functional Partners:
glyA
Serine hydroxymethyltransferase GlyA.
  
 
 0.966
serB
Phosphoserine phosphatase SerB.
   
 
 0.919
AII86023.1
L-threonine ammonia-lyase.
  
 
 0.918
sRY
Threo-3-hydroxyaspartate ammonia-lyase SRY.
  
 
 0.918
AII88565.1
Threonine dehydratase, biosynthetic.
  
 
 0.918
cysE
Serine acetyltransferase CysE.
     
 0.914
sgaA1
Serine--glyoxylate aminotransferase SgaA.
    
 0.907
sgaA2
Serine--glyoxylate aminotransferase SgaA.
    
 0.907
trpA
Tryptophan synthase alpha chain TrpA.
   
 
 0.904
trpB
Tryptophan synthase beta chain TrpB.
     
  0.900
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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