STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88283.1Hypothetical protein DUF1332. (117 aa)    
Predicted Functional Partners:
AII88284.1
Hypothetical protein.
       0.829
AII88285.1
Amino acid transport ATP-binding protein.
       0.643
AII88281.1
CTP synthase.
       0.590
AII88282.1
Hypothetical protein, DUF1330.
       0.528
secG
Preprotein translocase, SecG subunit SecG.
 
     0.516
AII88286.1
Putative amino acid transport extracellular solute binding protein.
       0.511
AII86995.1
Hypothetical protein.
  
     0.504
AII87040.1
Acyl carrier protein.
  
     0.464
AII88307.1
Putative transcriptional regulatorm marR family.
  
     0.428
AII86978.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.