STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88305.1Putative glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein. (142 aa)    
Predicted Functional Partners:
gloB
Hydroxyacylglutathione hydrolase GloB.
 
  
 0.960
AII86154.1
Glyoxalase/bleomycin resistance protein.
    
  0.902
ghrA
Glyoxylate/hydroxypyruvate reductase GhrA.
    
 0.902
AII88306.1
Hypothetical protein.
  
  
 0.834
AII86023.1
L-threonine ammonia-lyase.
   
 0.819
trpB
Tryptophan synthase beta chain TrpB.
   
  0.819
sRY
Threo-3-hydroxyaspartate ammonia-lyase SRY.
   
 0.819
AII88565.1
Threonine dehydratase, biosynthetic.
   
 0.819
sdaB
L-serine dehydratase SdaB.
   
 
  0.801
trpA
Tryptophan synthase alpha chain TrpA.
     
  0.800
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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