STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmDtRNA (guanine-N(1)-)-methyltransferase TrmD. (260 aa)    
Predicted Functional Partners:
rplS
50S ribosomal protein L19.
 
  
 0.989
rimM
Ribosome maturation factor RimM.
 
  
 0.984
rpsP
30S ribosomal protein S16.
 
  
 0.982
rpoC
DNA-directed RNA polymerase beta subunit RpoC.
 
  
 0.941
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase IspF.
  
   0.936
rpoA
DNA-directed RNA polymerase alpha subunit RpoA.
 
  
 0.919
infB
Translation initiation factor IF-2.
 
  
 0.911
rplM
50S ribosomal protein L13.
  
  
 0.909
rpoB
DNA-directed RNA polymerase beta subunit RpoB.
 
  
 0.902
rpsB
30S ribosomal protein S2.
  
  
 0.900
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.