STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmE50S ribosomal protein L31. (73 aa)    
Predicted Functional Partners:
rplS
50S ribosomal protein L19.
  
 
 0.995
rpsP
30S ribosomal protein S16.
  
 
 0.988
rpsT
30S ribosomal protein S20.
 
 
 0.985
rpmB
50S ribosomal protein L28.
  
 
 0.984
rplU
50S ribosomal protein L21.
  
 
 0.984
rplM
50S ribosomal protein L13.
  
 
 0.984
rpsI
30S ribosomal protein S9.
  
 
 0.983
rplT
50S ribosomal protein L20.
  
 
 0.982
rpoC
DNA-directed RNA polymerase beta subunit RpoC.
  
 
 0.982
rpmI
50S ribosomal protein L35.
  
 
 0.980
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.