STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88417.1Integrase. (318 aa)    
Predicted Functional Partners:
AII86469.1
Putative tyrosine recombinase xerC.
  
   
 0.772
AII86213.1
Hypothetical protein.
  
   
 0.721
AII86246.1
Integrase.
  
   
 0.721
AII88193.1
DNA polymerase.
  
  
 0.629
AII87743.1
Integrase.
  
     0.539
AII88418.1
Hypothetical protein, porin-like protein.
       0.534
recR
Recombination protein RecR.
  
   
 0.457
AII85629.1
Putative DNA transclocase FtsK.
 
   
 0.450
truB
tRNA pseudouridine synthase B.
      
 0.446
dus
tRNA-dihydrouridine synthase Dus.
     
 0.443
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.