STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AII88436.1Transcriptional regulator, AraC family. (297 aa)    
Predicted Functional Partners:
mtlK
Mannitol 2-dehydrogenase MtlK.
 
   
 0.866
AII88438.1
ABC sugar transporter, permease protein.
 
   
 0.808
AII88437.1
ABC sugar transporter, permease protein.
 
   
 0.782
AII88434.1
ABC sugar transporter, ATPase subunit.
     
 0.778
AII88439.1
ABC transporter, periplasmic substrate-binding protein.
 
   
 0.717
rpoA
DNA-directed RNA polymerase alpha subunit RpoA.
   
 
 0.619
AII86756.1
Putative HTH-type transcriptional regulator, AraC family.
  
     0.584
hpd
4-hydroxyphenylpyruvate dioxygenase Hpd.
 
  
 0.468
AII86965.1
Integrase.
  
  
 0.433
AII87493.1
Putative HTH-type transcriptional regulator, AraC family.
 
 
 0.430
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.