STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mnmEtRNA modification GTPase MnmE. (428 aa)    
Predicted Functional Partners:
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG.
 0.996
rsmG
Ribosomal RNA small subunit methyltransferase G.
  
  
 0.980
AII87306.1
Hypothetical protein.
  
 0.891
rplO
50S ribosomal protein L15.
  
 
 
 0.868
rho
Transcription termination factor Rho.
  
  
 0.867
AII87904.1
Putative GTP-binding protein EngB.
  
 
 
 0.851
rplU
50S ribosomal protein L21.
 
 
 
 0.836
parB
Chromosome-partitioning protein ParB.
  
  
 0.829
rlmB
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB.
 
 
 
 0.818
parA
Chromosome-partitioning protein ParA.
  
    0.810
Your Current Organism:
Planktomarina temperata
NCBI taxonomy Id: 666509
Other names: Candidatus Planktomarina temperata RCA23, P. temperata RCA23, Planktomarina temperata RCA23, Planktomarina temperata str. RCA23, Planktomarina temperata strain RCA23, Rhodobacteraceae bacterium RCA23
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.