STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ASAC_0059Putative xylose dehydrogenase. (328 aa)    
Predicted Functional Partners:
ASAC_0532
Putative xylose isomerase.
 
  
 0.983
lysS
lysyl-tRNA synthetase (LysS); Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.832
ASAC_0661
DTDP-glucose 4,6-dehydratase.
  
  
 0.828
ASAC_0788
Galactokinase.
  
 
 0.786
ASAC_0030
ATP-dependent 6-phosphofructokinase; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.691
rbsK
2-Keto-3-deoxy-gluconate kinase (KDGK); Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
 
  
 0.667
ASAC_0061
Dipeptide/oligopeptide ABC transporter, permease protein.
  
    0.662
ASAC_0060
Dipeptide/oligopeptide ABC transporter, permease protein.
       0.643
ASAC_0491
Ribokinase-like domain-containing protein.
  
  
 0.617
ASAC_0743
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
  
 0.613
Your Current Organism:
Acidilobus saccharovorans
NCBI taxonomy Id: 666510
Other names: A. saccharovorans 345-15, Acidilobus saccharovorans 345-15, Acidilobus saccharovorans str. 345-15, Acidilobus saccharovorans strain 345-15, Acidilobus sp. 345-15
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