Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
secEHypothetical protein; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. (59 aa)    
Predicted Functional Partners:
ASAC_0207
Preprotein translocase subunit secY; Belongs to the SecY/SEC61-alpha family.
   
 
 0.953
spt5
Putative transcription antitermination protein nusG; Stimulates transcription elongation; Belongs to the archaeal Spt5 family.
  
  
 0.952
ASAC_1128
Hypothetical protein.
  
   0.945
rpl18a
50S ribosomal protein LX.
  
   0.920
ASAC_1251
Hypothetical protein.
   
 
 0.912
rps28e
30S ribosomal protein S28e; Belongs to the eukaryotic ribosomal protein eS28 family.
   
   0.907
rps19e
30S ribosomal protein S19e; May be involved in maturation of the 30S ribosomal subunit. Belongs to the eukaryotic ribosomal protein eS19 family.
  
   0.907
ASAC_1221
50S ribosomal protein L32e.
   
   0.904
rpl44e
50S ribosomal protein L44E; Binds to the 23S rRNA.
   
   0.899
rpl29
50S ribosomal protein L29P; Belongs to the universal ribosomal protein uL29 family.
   
   0.893
Your Current Organism:
Acidilobus saccharovorans
NCBI taxonomy Id: 666510
Other names: A. saccharovorans 345-15, Acidilobus saccharovorans 345-15, Acidilobus saccharovorans str. 345-15, Acidilobus saccharovorans strain 345-15, Acidilobus sp. 345-15
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