Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ASAC_0537 | ASAC_0567 | ASAC_0537 | ASAC_0567 | Fumarate hydratase. | Fumarylacetoacetate hydrolase family protein. | 0.879 |
ASAC_0537 | ASAC_1277 | ASAC_0537 | ASAC_1277 | Fumarate hydratase. | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | 0.972 |
ASAC_0537 | ASAC_1278 | ASAC_0537 | ASAC_1278 | Fumarate hydratase. | Fumarase (fumarate hydratase) class I, C-terminal domain protein. | 0.972 |
ASAC_0537 | ASAC_1440 | ASAC_0537 | ASAC_1440 | Fumarate hydratase. | Succinate:quinone oxidoreductase, iron-sulfur subunit B. | 0.987 |
ASAC_0537 | ASAC_1441 | ASAC_0537 | ASAC_1441 | Fumarate hydratase. | Succinate:quinone oxidoreductase, hydrophobic anchor subunit D. | 0.935 |
ASAC_0537 | ASAC_1442 | ASAC_0537 | ASAC_1442 | Fumarate hydratase. | Succinate:quinone oxidoreductase, cytochrome b subunit C. | 0.980 |
ASAC_0537 | ASAC_1443 | ASAC_0537 | ASAC_1443 | Fumarate hydratase. | Succinate:quinone oxidoreductase, flavoprotein subunit A. | 0.999 |
ASAC_0537 | sucC | ASAC_0537 | ASAC_1073 | Fumarate hydratase. | Succinyl-CoA synthetase beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.806 |
ASAC_0537 | sucD | ASAC_0537 | ASAC_1072 | Fumarate hydratase. | Succinyl-CoA synthetase alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. | 0.874 |
ASAC_0567 | ASAC_0537 | ASAC_0567 | ASAC_0537 | Fumarylacetoacetate hydrolase family protein. | Fumarate hydratase. | 0.879 |
ASAC_0567 | ASAC_1277 | ASAC_0567 | ASAC_1277 | Fumarylacetoacetate hydrolase family protein. | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | 0.805 |
ASAC_0567 | ASAC_1278 | ASAC_0567 | ASAC_1278 | Fumarylacetoacetate hydrolase family protein. | Fumarase (fumarate hydratase) class I, C-terminal domain protein. | 0.807 |
ASAC_0567 | ASAC_1440 | ASAC_0567 | ASAC_1440 | Fumarylacetoacetate hydrolase family protein. | Succinate:quinone oxidoreductase, iron-sulfur subunit B. | 0.838 |
ASAC_0567 | ASAC_1441 | ASAC_0567 | ASAC_1441 | Fumarylacetoacetate hydrolase family protein. | Succinate:quinone oxidoreductase, hydrophobic anchor subunit D. | 0.816 |
ASAC_0567 | ASAC_1442 | ASAC_0567 | ASAC_1442 | Fumarylacetoacetate hydrolase family protein. | Succinate:quinone oxidoreductase, cytochrome b subunit C. | 0.822 |
ASAC_0567 | ASAC_1443 | ASAC_0567 | ASAC_1443 | Fumarylacetoacetate hydrolase family protein. | Succinate:quinone oxidoreductase, flavoprotein subunit A. | 0.889 |
ASAC_1277 | ASAC_0537 | ASAC_1277 | ASAC_0537 | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | Fumarate hydratase. | 0.972 |
ASAC_1277 | ASAC_0567 | ASAC_1277 | ASAC_0567 | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | Fumarylacetoacetate hydrolase family protein. | 0.805 |
ASAC_1277 | ASAC_1278 | ASAC_1277 | ASAC_1278 | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | Fumarase (fumarate hydratase) class I, C-terminal domain protein. | 0.999 |
ASAC_1277 | ASAC_1440 | ASAC_1277 | ASAC_1440 | Fumarase (fumarate hydratase) class I, N-terminal domain protein. | Succinate:quinone oxidoreductase, iron-sulfur subunit B. | 0.981 |
page 1 of 5