STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
M301_1209KEGG: mmb:Mmol_1771 GAF modulated sigma54 specific transcriptional regulator, fis family; PFAM: sigma-54 factor interaction domain-containing protein; GAF domain protein; helix-turn-helix Fis-type; SMART: AAA ATPase. (641 aa)    
Predicted Functional Partners:
M301_0230
RNA polymerase, sigma 54 subunit, RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.814
M301_0885
TIGRFAM: dihydroxyacetone kinase, DhaK subunit; KEGG: mmb:Mmol_1376 dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase.
    
 
 0.577
M301_0886
KEGG: mmb:Mmol_1375 dihydroxyacetone kinase, L subunit; TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase.
    
 
 0.577
M301_1210
KEGG: mei:Msip34_0170 hypothetical protein.
       0.543
M301_0676
KEGG: mmb:Mmol_0656 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region.
     
 0.538
M301_1211
KEGG: app:CAP2UW1_4080 hypothetical protein.
       0.418
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
      
 0.416
M301_1212
PFAM: periplasmic solute binding protein; KEGG: app:CAP2UW1_4081 periplasmic solute binding protein.
       0.411
Your Current Organism:
Methylotenera versatilis 301
NCBI taxonomy Id: 666681
Other names: M. versatilis 301, Methylotenera sp. 301, Methylotenera versatilis str. 301, Methylotenera versatilis strain 301
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.