STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG87330.1PFAM: HlyD family secretion protein; TIGRFAM: efflux pump membrane protein (multidrug resistance protein A). (394 aa)    
Predicted Functional Partners:
AGG87331.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.940
AGG87329.1
PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.928
AGG89177.1
PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.865
AGG89236.1
PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.865
AGG89483.1
PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.865
AGG87332.1
Transcriptional regulator; PFAM: MarR family.
 
  
 0.797
AGG89260.1
Arabinose efflux permease family protein; PFAM: Major Facilitator Superfamily; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
 
 0.788
AGG89481.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.686
AGG89184.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.624
AGG89230.1
PFAM: Outer membrane efflux protein; TIGRFAM: efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 
 0.624
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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