STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGG89041.1Hypothetical protein. (94 aa)    
Predicted Functional Partners:
AGG89042.1
PFAM: ParB-like nuclease domain; TIGRFAM: PRTRC system ParB family protein; ParB-like partition proteins; Belongs to the ParB family.
       0.628
AGG89040.1
DNA methylase; PFAM: SNF2 family N-terminal domain.
       0.572
AGG89043.1
Hypothetical protein.
       0.455
AGG89044.1
Hypothetical protein.
       0.417
AGG89045.1
Hypothetical protein.
       0.417
AGG89046.1
Hypothetical protein.
       0.417
AGG89047.1
TIGRFAM: PRTRC system protein B.
       0.417
AGG89048.1
PRTRC system protein A; PFAM: Domain of unknown function (DUF2016); TIGRFAM: PRTRC system protein A.
       0.417
AGG89049.1
PFAM: ThiF family; TIGRFAM: PRTRC system ThiF family protein.
       0.417
Your Current Organism:
Rhodanobacter denitrificans
NCBI taxonomy Id: 666685
Other names: DSM 23569, JCM 17641, R. denitrificans, Rhodanobacter denitrificans Prakash et al. 2012, Rhodanobacter sp. 116-2, Rhodanobacter sp. 2APBS1, Rhodanobacter sp. FW104-R3, strain 2APBS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.